Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THYM rs16887286 chr4:12581496 T/A 1.06E-6 118 38.23 57.27 12.78 KM Plot
THYM rs16910148 chr11:11814176 C/T 0.000177 118 40.67 42.9 13.35 KM Plot
THYM rs16910198 chr11:11840153 C/G 0.000112 118 41.77 42.73 13.35 KM Plot
THYM rs16910208 chr11:11850345 A/C 0.000132 119 13.35 40.78 41.77 KM Plot
THYM rs16911832 chr9:97244059 A/G 8.42E-5 119 40.67 46.07 17.03 KM Plot
THYM rs16937344 chr11:20024139 A/G 2.69E-6 118 42.25 29.9 13.75 KM Plot
THYM rs16937347 chr11:20026717 A/G 4.14E-6 119 42.73 29.9 13.75 KM Plot
THYM rs16937352 chr11:20032010 G/C 4.03E-6 118 42.73 32.7 13.75 KM Plot
THYM rs16961809 chr19:29226299 C/T 0.000112 117 48.33 40.3 22.9 KM Plot
THYM rs16969894 chr15:78776456 C/T 3.52E-5 118 42.82 46.6 26 KM Plot
THYM rs17002460 chr4:78157288 C/A 8.93E-6 117 39.75 45.87 31.72 KM Plot
THYM rs17009601 chr2:30737707 T/G 1.42E-8 118 38.58 48.33 33.13 KM Plot
THYM rs17009805 chr2:30795895 T/C 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs17009808 chr2:30797707 G/A 1.33E-8 119 36.4 50.1 33.13 KM Plot
THYM rs17016170 chr4:143386335 G/A 0.000191 119 38.58 46.6 18.42 KM Plot